EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
...http://arthropods.eugenes.org/EvidentialGene/Construction refers to the combination of classical gene prediction, and more recent gene assembly (de-novo and genome-assisted) methods....2223 days ago
Metassembler: merging and optimizing de novo genome assemblies
Metassembler combines multiple whole genome de novo assemblies into a combined consensus assembly using the best segments of the individual assemblies. Genome assembly projects typi...2223 days ago
kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of sample gen...mples without any reference genome, and without assembling one. De novo estimates of genetic relatedn...2202 days ago
2195 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
We are pleased to release PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++. Its name describes the strategy that it implements for genome...2189 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing...ligners and error correction tools. MECAT can be used for effectively de novo assemblying large genomes. Fo...2220 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
...ntact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. Furthe...Qiu R, Kitzman JO, Shendure J#. Chromosome-scale scaffolding of de novo genome assemblies based on ch...2217 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
...ce of contiguity information for scaffolding de novo genome assemblies. FragScaff...to support robust, accurate chromosome-scale de novo genome assemblies without the...n vitro, long-range sequence information for de novo genome assembly via transposa...2217 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
With increased availability of de novo assembly algorithms, it is feasible to study entire transcriptomes o...s CD, Tarone AM. (2017) A scalable and memory-efficient algorithm for de novo transcriptome assembly of non...2167 days ago
2167 days ago