Results for "Protein Structure Prediction and Drug Design"
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The hive plot is a rational visualization method for draw...ing networks. Nodes are mapped to and positioned on radially distri...are drawn as curved links. Simple and interpretable. The purpose o...sh; a method that is both general and...int in visually exploring network struct...2675 days ago
- ABACAS is intended to rapidly contiguate (align, order, orientate) , visualize and design primers to close gaps on shotgun assembl...It uses MUMmer to find alignment positions and...a pseudomolecule taking overlaping contigs and gaps in to account. MUMmer's ali...
2675 days ago
- A computational pipeline for identifying single-base substitutions between two closel...h of coverage is insufficient for de novo assembly, and...the identified sequence differences can be used to design genotyping arrays to assist i...
2662 days ago
Metagenomics assembly workshop !!
Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you through the typical steps of metagenome assembly and...GAHIT Assembly IDBA-UD Assembly Ray Assembly Gene Predic...2614 days ago
- DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for prot...earch as well as DNA-protein search on short reads and lo...
2605 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation...i-level process that includes prediction of protein-coding genes, as well as...sp;the pipeline in NCBI Handbook chapter. NCBI's annotation p...2586 days ago
- The process of finishing a genome and moving it from a draft&n...te genome is typically a time and resource intensive task. The...e genomes is more challenging and often draft genomes are fragm...ed the use of optical mapping and mate-pair data to augment ass...multiple maps, contig graphs and...
2582 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and computationally undemanding....ssessments of horizontal transfer pred...onstrated in bacterial, archaeal, and eu...2549 days ago
eQuant : energy-based quality assessment of protein
Protein structures are of varying quality. Especially, in-silico modeled structures are prone to contain serious errors, which limit the usefulness and reliability of these particular protein stru...structure quality assessment of single protei...2547 days ago
CoreTracker, a codon reassignment tracker
CoreTracker detects evidences of codon reassignment from the protein repertoire of a set of genomes by successively...reassignments in every genomes from the input set, and...tailled information about the package, installation and tu...2542 days ago
