HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
HISAT2 is a fast and sensitive alignment program for mapping next-genera...ads (both DNA and RNA) to a population of human genomes (as well as to a sing...GFM index that represents a population of huma..., with 55,000 indexes needed to cover the human...2217 days ago
CrossMap: a program for convenient conversion of genome coordinates
CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human...2194 days ago
2193 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer program that uses a short sta...nce of assembling the resulting sequences is achieved by using a known genome, such as human...2183 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder, a fast and accurate tool using paired-end RNA-sequencing reads to scaffol...f both protein-coding and non-coding genes. After this tool was applied to scaffolding human...2182 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single mole...example, on a 32-thread computer with 2.0 GHz CPU , MECAT takes 9.5 days to assemble a human...2214 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package). It is a...itude faster. It require only 2 minutes aligning one million single-end reads onto the human...2201 days ago
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
git clone https://github.com/lh3/minimap2 cd minimap2 && make # long sequences against a reference genome ./minimap2 -a test/MT-huma...# create an index first and then map ./minimap2 -d MT-human...2174 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
Choosing whether to use second or third generation sequencing platforms can lead to trade-o...ese reads. Using datasets from two DNA-seq BAC clones (CH17-157L1 and CH17-227A2), and human...2112 days ago
2111 days ago