MOSS: A System for Detecting Software Similarity
Moss (for a Measure Of Software Similarity) is an automatic system for determining the similarity of programs. To...tion algorithms (at least, over those known to us). Moss can currently analyze code w...2366 days ago
iTOL: Interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display, annotation and mana...ata. iTOL can easily visualize trees with 50'000 or more leaves. With advanced search capabilities and display of u...2510 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the...the nucleotide sequences of different pieces of DNA. The Basic Local Alignment Search Tool (BLAST) has revolutioniz...2504 days ago
LIBSVM -- A Library for Support Vector Machines
...nformation for training SVM. Journal of Machine Learning Research 6, 1889-1918, 2005. You can also find a pseudo code there. (how to cite LIBSVM)...p;LabVIEW, and PHP interfaces. C# .NET code and CUDA extension is...2495 days ago
orthodotter: Synteny plots (oxford grid)
orthodotter -h -------------------------------------------------------------------------------- orthodotter - Plot orthologous genes on an oxford grid. -f <...2488 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three fol...2392 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and...that detects CHSs based on shared gene content alone. It implements fast greedy search algorithm and rigorous statis...2387 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
This package is intended to provide tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer. It includes a functions to generate a...2382 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
This is the c++ implementation for SIMA - Simultaneous Multiple Alignment of LC/MS Peak Lists. The package contains C++ source code a...2382 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outpu...2378 days ago