Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we pres...rently contains a large collection of diverse gene set libraries available for a...contains 180 184 annotated gene sets from 102 gene set li...2598 days ago
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ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query,...al metabolic and non-metabolic pathways, ERGO™ assigns functions to genes, integrates genes into...2579 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and arc...process that includes prediction of protein-coding genes, as well as other functional...such as structural RNAs, tRNAs, small RNAs, pseudogenes, cont...2579 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real...facilitates the real-time analysis of positional information such as gene ordering and the detection of genes from...2572 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...base and CAT. All data in dbCAN are generated based on the family clas...complete set of metagenomic CAZyme genes published so far and represe...ts, hidden markov models (HMMs) and phylogenies of the signature domain regio...2566 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is pre...tationally undemanding. It can be combined with genomic signature and/or phylogenetic tre...2542 days ago
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Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strat...ies. Input formats, automated data upload from the UCSC Genome Browser, gene annota...2514 days ago