Results for "Mapping-based"
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pyScaf orders contigs from genome assemblies utilising several types of information: paired-end (PE) and/or mate-pair libraries (NGS-based mode) long reads (NGS-based...2749 days ago
- If genomes were completely random sequences in a statistical sense, 'overlap-consensus-layout' method would have been enough to assemble large genomes from Sanger reads. I...
2748 days ago
- Motif based sequence analysis suits The MEME Suite allows the biologist to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to...
2745 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often based on whole-genome al...2719 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best alignment per query and is dramatically faster and more sen...
2717 days ago
iTOL: interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display and manipulation of phylogenetic trees. It provides most of the features available in other tree viewers, a...2706 days ago
TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation...2645 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as distance-...2700 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running ChromoPainter and FineSTRUCTURE for population inference. A GUI is available for inter...2693 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widley ac...
2690 days ago
