2531 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often 100 bp to 150 bp)...as a module of the MaSuRCA assembly software. Both are available under the GPL open sourc...2414 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and between genomes is essential f...stic data and compared its performance with similar existing software and data sourc...2403 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the...a to public repositories. Our analysis pipeline is open-source and freely available at ...p://sdittami.altervista.org/taxoblast and via Sourc...2399 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
This is the c++ implementation for SIMA - Simultaneous Multiple Alignment of LC/MS Peak Lists. The package contains C++ sourc...2398 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membrane pore has been postulated as a method for sequencing D...cing the S. cerevisiae genome. To make use of these data, we developed a novel open-sourc...2393 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical...hnologies. A population sampler optionally produces evolved sequences based on sourc...2388 days ago
2381 days ago
Bandage: interactive visualization of de novo genome assemblies
Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) is a tool for v...through investigation of contigs alone. Availability and implementation: Sourc...2388 days ago
2381 days ago