Results for "Sequence Analysis"
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Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. I...q and Chip-seq. Stampy excels in the mapping of reads containing that contain sequence...2958 days ago
- Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
2956 days ago
- This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand how sequence...
2945 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants...
2945 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visual...throughput sequencing data). It contains bash/perl/R scripts for running the analysis presented in the paper to cre...
2935 days ago
- ...g (GAEMR) package is an assembly analysis framework composed a number o...e program to generate a complete analysis report, or executed individua...to be entered into GAEMR’s analysis pipeline, hence enabling the...accurately represent the genome sequenced, and how much of that genome...
2934 days ago
- Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous display...
2934 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configurat...2218 days ago
- In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the me...opment. Here is the acknowledgements section of our methods paper An analysis and visualization platform fo...
2931 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visua...
2931 days ago
