Results for "Sequence analysis."

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  • Stampy

    Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. I...q and Chip-seq. Stampy excels in the mapping of reads containing that contain sequence...

    2948 days ago

  • Cytoscape

    Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.

    2946 days ago

  • HistoneDB 2.0 – with variants

    This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand how sequence...

    2934 days ago

  • methylKit

    methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data fro...

    2934 days ago

  • Blobology

    Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step Blaxter Lab, Institute...

    2924 days ago

  • GAEMR

    The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysi...n assembly composed of, how well those pieces accurately represent the genome sequenced...

    2923 days ago

  • Blobsplorer

    Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous display o...

    2923 days ago

  • CovCal: Coverage / Read Count Calculator

    Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configurat...

    2207 days ago

  • Anvio

    In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the methods paper here: https://peerj.com/articles/1319/ Anvi&...

    2921 days ago

  • clusterProfiler

    statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and...

    2921 days ago