MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
...nd requires minimal programming skills. High-quality prokaryotic genome assembly and annotation can be obtained with ease. It performed better than de novo assemblers and contig integration...2725 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
...e become even more difficult, de novo assembly being on top of this list...esign tools able to assemble, de novo, an organism sequenced with s...hod that aims to improve de novo assembly in the presence of a closely...rence. The idea is to combine de novo and reference-guided assembly in...2721 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al.,...2721 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs...produce an improved contig set based on OLC based assembly. All overlap parameters (Mini...to $binpath in the tool: Newbler (specifically runAssembly)Minimus2 (part of AMOS, also...2721 days ago
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