Results for "Data mining"
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Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pool...obsplorer is unlikely to be of use on its own as it requires contig data t...2910 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement...methods analyse unprocessed sequencing data without relying on prior know...clustering genomic and transcriptomic data with no limitation on ge-nome...pplementary information: Supplementary data a...2908 days ago
- In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the methods paper here: https://peerj.com/articles...methods paper An analysis and visualization platform for 'omics data&n...
2908 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is crucial for genetic innovat...then compared the method to existing HGT detection tools using a larger strain data s...
2902 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giv...xercises as it is a language in itself and is used more often to manipulate NGS data a...2902 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bowti...meaning that you only need to install SAMtools, and no other tools, and sample data s...
2901 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform....ce accurate results, A5-miseq requires Illumina data with certain characteristics....nt assembler if a tool like FastQC reports your data q...
2845 days ago
- ...latory elements. These interaction datasets are important resources t...ontologies, making sense of these datasets demands integrative and e...ta visualization, integration, and mining. Currently, there is no sof...unctional genomics and interaction datasets, 3) querying network compon...
2897 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Pr...abundance estimation programs, which only classify small subsets of metagenomic data....2897 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biologica...g upper-quantile normalization on expression data or convert genome wide gene e...ession to z-scores when comparing expression data f...
2895 days ago
