2342 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale genome analysis. To start using MGcV: Supply your genes/genomic segments/phylo...2332 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a...2323 days ago
Generate interactive codon usage plots
Generate interactive codon usage plots as used at ensembl.lepbase.org. The input file format can be generated from an Ensembl database using the export_json.pl script from the easy-import pipeline. live demo2302 days ago
UCSC SARS-CoV-2 Genome Browser
The UCSC SARS-CoV-2 Genome Browser (https://genome.ucsc.edu/covid19.html) is an adaptation of our popular genome-browser visualization tool for this virus, containing many annotation...894 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein sequence sets. MMseqs2 is open source GPL-licensed software imple...2280 days ago
2252 days ago
DendroPy: a Python library for phylogenetic computing
...and Python 2 (Python 2.7 only). You can install DendroPy by running: More information is available here: http://dendropy.org/downloading.html Documentation Full docu...2248 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
...for EvidentialGene is publicly available. See project wiki/blog for notes. Download http://arthropods.eugenes.org/EvidentialGene/trassembly.html https://sourceforge.net/p/ev...2233 days ago
Porechop: tool for finding and removing adapters from Oxford Nanopore reads
Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its m...2212 days ago