2988 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...rom public sources) Checking sequence quality, trimming, general sequence manipulation Mapping reads to a reference genome Manipulating SAM/BAM alignment files Visualizing data...2988 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on...meters and tune mrFAST with respect to the library settings. mrFAST is designed to find 'all' m...2988 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the P...cal assembly pipeline which runs in four steps: Detect overlaps in high-noise sequences using M...2971 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The de...;conditional exclusive compression, namely using a FCM (Markov model), of high context order (typically 20)...2988 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets o...2986 days ago
2974 days ago
2974 days ago
YASS :: genomic similarity search tool
...t format (it produces local pairwise alignments). Like most of the heuristic pairwise local alignment tools for DNA sequences...d then tries to extend them to local alignments. This genomic search to...lexity repeats reporting of various alignment statistical parameters (...2982 days ago
Painless package development for R
...cle of package development. With devtools, developing a package becomes so easy that it will be your default layout whenever you’re writing a significant amount of code. Befo...2981 days ago