Results for "PE"
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...able and easily configurable genome annotation pipeline.Its purpose is to allow s...ukaryotic and prokaryotic genome projects to independently annotate their genomes...d to create genome databases. MAKER identifies repeats, aligns ESTs and proteins...3058 days ago
- ...an unannotated query genome. It was first developed to transfer annotations betw...annotations between strains and even different species, like Plasmodium chabaudi...Salmonella enterica onto other Salmonella serotypes. RATT is able to transfer an...
3058 days ago
- ...ies. It’s not a program for aligning sequences to reference genome. We do not recommend using CrossMap to convert genome coordinates between species. More at http://crossmap...
3057 days ago
- ...e base differences Small indels Larger indel or block substitution events Gap filling Identification of local misassemblies, including optional opening of new gaps More at ht...
3057 days ago
- Spines Spines is a collection of software tools, developed and used by the Vertebrate Genome Bi...ation (mostly genomic sequences, alignments, variation etc.), as well as specialized tool sets for various...
3056 days ago
- flo - same species annotations lift over pipeline Lift over is the process of transferring...e is a new, improved genome assembly for the species and good quality annotations (maybe manually curated or experimentally verified) are avail...
3055 days ago
- ...ast genomes are difficult to infer, and in most species they are still unknown. R...tions for each chromosome in 14 different yeast species. For yeasts with large ce...we predict centromere coordinates for six yeast species that currently lack centr...
3053 days ago
UCSC Genome Browser and Blat software !
...lone command-line use on various supported Linux and UNIX platforms. To determine which set of binaries to download, type "uname -a" on the command line to display your machine type. In most cases the usage stat...3047 days ago
- ...mats and the collection of data from multiple data files. They rely on BioPerl SeqFeature libraries and re...nd analyzing data, and data format conversion. More at http://cpansearch.perl.org/src/TJPARNELL/
3046 days ago
- ...to take you through the main features and gotchas of configuring GBrowse as a server. This tutorial assumes that you have successfully set up Perl, GD, BioPerl and the other GBrowse depen...
3046 days ago
