RestrictionDigest: A powerful Perl module for simulating genomic restriction digests
RestrictionDigest can simulate the reference genome digestion and generate comp...re information, please see the academic paper published online (http://www.sciencedirect.com/science/article/pii/S071734581630001X...2196 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
Contiguity preserving transposition and sequencing (CPT-seq) is an entirely in vitro means...quence information for de novo genome assembly via transposase contiguity. Genome Researc...2225 days ago
2225 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence read...ganisms only. VCF input should contain diploid variants. If you use HapCUT2 in your researc...2224 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and elegant graphics visualization of the chromosomes or...of heat colors which can be highly advantageous in the scientific interpretations and researc...1892 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package). It is...uctures (2way-BWT) are developed by the algorithms research group of the Department of Computer Science, the University of Hong Kong...2216 days ago
RNA-seq Analysis Workshop Course Materials
RNAseq can be roughly divided into two "types": Reference genome-based - an asse...using de novo approaches. This type of RNAseq is as much of an art as well as science because assembly is heavily p...2175 days ago
Instructions for Creating Your Own R Package
The following is a step-by-step guide to creating your own R package. Even beyond this course, youmay find this useful for storing functions you create for your own researc...1580 days ago
2111 days ago
BioGPS: Spotlight on the Gene Expression Atlas
BioGPS opened 2016 with a publication in Nucleic Acids Research, right after the New Year holiday. Throughout the year, new designs for the site were being created, reviewed, adjust...2068 days ago