FUMA GWAS: Functional Mapping and Annotation of Genome-Wide Association Studies
FUMA is a platform that can be used to annotate, prioritize, visualize and interpret GWAS results. The SNP2GENE function takes GWAS summary statistics as an input, and...1836 days ago
gVolante: Completeness Assessment of Genome/Transcriptome Sequences
gVolante provides an online interface for completeness assessment of user’s original or publicly available sequence datasets as well as for browsing results of completeness assessment performed on publicly available genome and transcriptome assemblies.1769 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
...un on highly inbred genotypes of barley (Hordeum vulgare), tetraploid wheat (Triticum turgidum) and hexaploid wheat (T. aestivum) with reasonable results: super-scaffold N50 values in...1756 days ago
Musket - a multistage k-mer spectrum based corrector
...orrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation results, in terms of correction quali...1587 days ago
MEC: Contig Misassembly Correction
...ical analysis of GC-contents. We apply MEC to four real contig datasets, and carry out experiments to analyze the influence of MEC on scaffolding results, which shows that MEC can red...1587 days ago
netGO: R-Shiny package for network-integrated pathway enrichment analysis
...tGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visualization of enrichment analysis results and related networks. Curren...1579 days ago
BlobToolKit: A toolkit for genome assembly QC
...r published genomic datasets even for highly fragmented assemblies. BlobTools2 is a command-line program to convert assemblies and analysis results into datasets that can be fur...1571 days ago
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NucDiff: In-depth characterization and annotation of differences between two sets of DNA sequences
...with available reference genomes. NucDiff provides information about the types of differences and their locations. It is possible to upload the results into genome browser for visua...1497 days ago