INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2391 days ago
2389 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly u...2389 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool provi..., Ready to be used on desktop computer, cluster, cloud as well as within distributed system r...2387 days ago
MinION_GC: An R script to do some QC on MinION data
Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on a single,...2384 days ago
Musket: a multistage k-mer spectrum based corrector
Musket is a well-established leading next-generation sequencing read error corre...argetting Illumina sequencing. This corrector employs the k-mer spectrum approach and introduces three correcti...2382 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
Sequence alignment algorithms are widely used to infer similarirty and the point of d...GSAA is a fast Global alignment algorithm. It is basically a branch and bound approach which starts branch expansion...2380 days ago
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
TRRUST contains 8,444 and 6,552 TF-target regulatory relationships of 800 human TFs a...hips from over 20 million pubmed articles, we used sentence-based text mining approach. TRRUST database also provid...2366 days ago
Rectangle Graph for Repeat Resolution in Genome Assembly
Ultimate tool for resolving repeats in genome assemblies....implementation of the idea of the rectangle graph approach is already included into the&...the current implementation of the rectangle graph approach in SPAdes, in the future we p...2360 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
Alien_hunter is an application for the prediction of putative Horizontal Gene Transfe...th the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases...2349 days ago