StatBio (Simpson Group WebPage)
2294 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and environmental research. Courses Old courses (2012-2014) Met...15 February - Uppsala 2015 May - Gothenburg2015 September - Uppsala2...ring;2017 January - Uppsala2017 May - Gothenburg2...2252 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
Scallop is an accurate reference-based transcript assemb...er has been published at Nature Biotechnology. The datasets and scripts used in this paper to compare the pe... iTunes. https://github.com/Kingsford-Group/sca...2231 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
Contiguity preserving transposition and sequencing (CPT-s...are, fragScaff, leverages coincidences between the c...ate chromosome-scale de novo genome assemblies without the ne...sembly via transposase contiguity. Genome Research...2225 days ago
2224 days ago
LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-ba...ovel split alignment approach with fa...-pairs). LAMSA takes takes the advantage of the r...tigate the effect of repeats. The alignments of the fragments a...ants. We benchmarked LAMSA with sim...er for Bioinformatics, Harbin Institute of Technology, China.2224 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
HapCUT2 is a maximum-likelihood-based to...eads, designed to "just work" with excellent speed and accuracy....ad technologies or protocols, with slow or inaccurate performance on others...technologies combinations of the abov...ies (e.g. scaffold long reads with H...If you use HapCUT2 in your research,...2224 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and...ts (like genes, SNPs etc.) on the chromosome plot. It introduces...pping elements, can visualize the data associated with chromosome elements (like ge...e sets, chromosome heat-maps, group annotations, adding hyperlinks, and labelling. The plots...1892 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
SOAPaligner/soap2 is a member of the SOAP (Shor...short oligonucleotide alignment. The new program features in super fast...ne million single-end reads onto the human reference genome. Anoth...ce efficiency by a revolution in the basi...are developed by the algorithms research group of...2216 days ago
Instructions for Creating Your Own R Package
The following is a step-by-step guide to creating your own R...his useful for storing functions you create for your own research or for editing existingR...f instructions. If you use RStudio, you can follow the &ldqu...1579 days ago