Results for "WA"
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...s, making sense of these datasets demands integrative and easy-to-use software tools. Moreover, network re...e data visualization, integration, and mining. Currently, there is no software that can take full advantag...2924 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
..., 909 times faster than Megablast and 11 times faster than the abundance estimation program MetaPhlAn. Kraken is available at http://ccb.jhu.edu/software/kraken/. Krona https://so...2924 days ago
- ...ding fungi and microbial eukaryotes. Kaiju translates reads into amino acid sequences, which are then searched in the database using a modified backward search on a memory-efficien...
2924 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate th...2916 days ago
- ...nd many other charts PCoA, clustering and networks Supports metadata MEGAN parses many different types of input Why use MEGAN6? The software is: Easy to use. MEGAN6...
2896 days ago
- ...and heterozygous diploid or polyploid organisms. Use a different assembler if a tool like FastQC reports your data quality is dubious. You have been warned! Datasets consisting sole...
2872 days ago
VAGUE:Velvet Assembler Graphical Front End
...ne version of Velvet can be complicated for beginners to use, but VAGUE makes it clear and simple More at http://www.vicbioinformatics.com/software.vague.shtml2682 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to identify SNPs, ind...
2874 days ago
- ...n and quality assessment of de novo genome assemblies Citation This software is fully described in the p...ript evidence that suggests adjacency between scaffolds and contigs. Software requirements BLAT (tested...
2866 days ago
- ...mp; lightweight, multi-core support and memory-optimised, so it can be run even on the laptop for small-to-medium size genomes flexible toward many sequencing technologie...
2858 days ago
