Results for "Whole genome resequencing"
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Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://genome.ucsc....2921 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing...olution data for 5hmC obtained from Tab-seq or oxBS-seq. It can also handle whole-genome bisul...
2908 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC st...ge plots (TAGC plots) to visualise the contents of genome assem...
2898 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an asse...ssembly composed of, how well those pieces accurately represent the genome sequenced, and how much of that genome is re...
2897 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a targe...nstructions: set the read length/configuration and genome size, then select what you wa...C = Coverage (X),L = Read length (bp), G = Haploid genome size...2181 days ago
- DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selec...e a lineage probability index (LPI) score for each genome prote...
2889 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is...rucial for genetic innovation and the evolution of genome architecture. Existing HGT de...estral (vertically derived) genes in its recipient genome. Dete...
2889 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with unifo...
2888 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at dista...apping interactions between DNA regions, e.g., ChIA-PET and HiC, can generate genome-wide...
2884 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of bi...ks like performing upper-quantile normalization on expression data or convert genome wide...
2882 days ago
