Results for "genome structure"
Bookmarks
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://genome.uc...2957 days ago
PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2956 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. T...ion data for 5hmC obtained from Tab-seq or oxBS-seq. It can also handle whole-genome bi...
2945 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC st...ge plots (TAGC plots) to visualise the contents of genome as...
2935 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assem...assembly composed of, how well those pieces accurately represent the genome sequenced, and how much of that genome is...
2934 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a targe...nstructions: set the read length/configuration and genome size, then select what you wa...C = Coverage (X),L = Read length (bp), G = Haploid genome si...2218 days ago
- DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selec...e a lineage probability index (LPI) score for each genome pr...
2926 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is...rucial for genetic innovation and the evolution of genome architecture. Existing HGT de...estral (vertically derived) genes in its recipient genome. D...
2926 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with unif...
2925 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at dista...apping interactions between DNA regions, e.g., ChIA-PET and HiC, can generate genome-wi...
2921 days ago
