Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
...ompletely alignment-free method/tool to find and visualise genomic rearrangements...odel), of high context order (typically 20). For visualisation, Smash outputs a&n...some] of several primates was equal/different, having at a glance a map of the en...2974 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets o...2973 days ago
2961 days ago
YASS :: genomic similarity search tool
...e is that you can specify the seed pattern used in the search step (as provided for example by iedera). M...ossibly overlapping seeds and a new hit criterion to ensure a good sensitivity/selectivity trade-off tran...2969 days ago
2958 days ago
RCircos: an R package for Circos 2D track plots
RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pi...2951 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...t and Pacific BioSciences SMRT. Indeed, MOSAIK was the only aligner to provide consistent mappings for all...technologies, low-coverage and exome) in the 1000 Genomes Project. To provide highly accurate alignments,...2950 days ago
2948 days ago
Bpipe - a tool for running and managing bioinformatics pipelines
Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'. January 20th, 2016 - New! Bpipe 0.9...2949 days ago
Stand-alone programs for Bioinformatician
...help on the bigBed and bigWig applications see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://genome.ucsc.edu/goldenPath/help/bigWig.html View the file 'FOOTER' to see th...2949 days ago