Results for "Genome Workbench"
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Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome as...2880 days ago
- Function WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled contigs using mate-pair data. It also produces editable scaffold maps, allowing ei...
2880 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for d...ion using data from multiple individuals.Genome STRiP looks both across and within a set of sequenced genomes to detect variation. The met...sults, but the method gains power across genomes a...
2825 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between ...FF/GTF, VCF. CrossMap is designed to liftover genome coordinates between assemblie...;a program for aligning sequences to reference genome....
2826 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other sc...d by mate-pairs. Such sources of information include alignment to a reference genome (B...
2846 days ago
- OrganellarGenomeDRAW is dedicated to convert genetic information stored in GenBank entries to graphical...for the creation of high-quality, detailed circular maps of organellar genomes like the plastid genome (p...
2846 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to id...f the post-treatment depends on the availability of a reference genome/tr...
2846 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo asse...alization and quality assessment of de novo genome assemblies Citation This so...alization and quality assessment of de novo genome as...
2838 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira...l. 2014. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome Bi...
2837 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of d...approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE wi...prediction of initial exons in most cases. http://genome.cr...
2836 days ago
