Results for "PE"
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Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enz...3041 days ago
- ...entify both simple and complex rearrangements from paired-end sequencing data. Users could ran it easily by just alling SVelter.py with proper parameters. It's also possib...
3035 days ago
- Machine Learning in Python Simple and efficient tools for data mining and data analysis Accessible to everybody, and reusable in various contexts Built on NumPy, SciPy, and matplotlib Open source, commercially usable - BSD license More at http://scikit-learn.org/stable/index.html
3035 days ago
- ...as SAM/BAM/CRAM and VCF. These file formats are defined in the Hts-specs repository. See especially the SAM specification a...elopment resources are available on GitHub. The Picard toolkit is open-source under the MIT license...
2976 days ago
- ...together the leading Genome Institutes and Centers with IT industry leaders to create global standards and tools for the secure, privacy respecting and interoperable sharing of Genomic data....
3015 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebre...-seq data. Trinity combines three independent software modules: Inchwo...us, and then processes each graph independently to extract full-length...NA-Seq data like so: Trinity --seqType fq --left reads_1.fq --right...3013 days ago
Awesome bioinformatics pipelines !
A curated list of awesome pipeline toolkits ... https://github.com/pditommaso/awesome-pipeline3005 days ago
PhyloGrapher - Graph Visualization Tool
...a drawing tool that generates custom graphs for a given set of elements. In general, it is possible to use PhyloGrapher to visualize any type of relations between elements...2998 days ago
- ...A is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNA...run (a true hybrid assembly) or by mapping one type of data to an assembly of oth...fe of sequence assembly that I've used and developed during the past 14 years to...
2999 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly a...n run with as low as just a few kilobytes of memory. PEAR evaluates all possible pair...More at http://www.exelixis-lab.org/web/software/pear Paper: http://www.ncb...2999 days ago
