Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences prov...to help decide between alternative sequencing methods for a sequence-based pro...2590 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and b...teny blocks to be used as input for downstream synteny-based analyses, all in an intuitive and easy-to-use web-based int...2590 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carboh...sp;CAT. All data in dbCAN are generated based on the family classification...on of the existing CAZyme families based on seque...CAZy database created new families based on...2585 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of...es and trimming short branches. Unitigs were generated based on minim...is of the overlap graph and then merged to contigs and scaffolds...2543 days ago
eQuant : energy-based quality assessment of protein
Protein structures are of varying quality. Especially, in-silico modeled structures are prone to contain serious errors, which limit the usefulness and reliabi...2558 days ago
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GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that allows users to analyse data produced using...lysis for next-gen data! Some of GeneProf's highlights include: Easy-to-use web-based int...2547 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
RNAcon is a web-server for the prediction and classification of non-coding RNAs. It uses SVM-based model for the discrimination between coding and ncRNAs and RandomForest-based predicti...fferent classes. The structural information based gra...2536 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full...ibed in the zPicture instructions and we refer the users to these materials for more details. This introd...2533 days ago