DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of new features and analytical methods allowing extensive...2695 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running ChromoPainter and FineSTRUCTUR...rganisms. Scripts to perform many types of conversion. Included in the main software do...2688 days ago
2684 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchai...within a single genome, segmental genome duplications can be revealed. This software di...2684 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads.----- PBJel...2674 days ago
2670 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer,...2667 days ago
2667 days ago
CONCOCT: Clustering cONtigs with COverage and ComposiTion
A program for unsupervised binning of metagenomic contigs by using nucleotide compositio...inkage data from paired end reads. Warning! This software is to be considered under dev...m one version to another. If you want to use this software, p...2667 days ago
Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in addition to PacBio's...to-date license information. A separate page lists commercial software. Know of any other open source software fo...2658 days ago