Results for "Various bioinformatics software"
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Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.2932 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly...ulos, Michael Clarke, Mark Blaxter(submitted 2013-10-01 to Frontiers in Bioinfor...
2910 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-free met...al@gmail.com Supplementary information: Supplementary data are available at Bioinfor...2907 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is cruc...: The method is publicly available athttp://research.haifa.ac.il/~ssagi/software/nearHGT.zip
2902 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving exp...and do all the processing inside: [uzi@quince-srv2 ~/]$ cp -r /home/opt/MScBioinfor...2902 days ago
- Recent studies of the human genome have indicated that regulator...hese datasets demands integrative and easy-to-use software tools. Moreover, network repr..., integration, and mining. Currently, there is no software that can take full advantage...
2896 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metage...ance estimation program MetaPhlAn. Kraken is available at http://ccb.jhu.edu/software/kraken/. Krona https://sour...2896 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biologica...for specific modules. Major focus of CSBB is to allow users from biology and bioinfor...
2895 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than...2888 days ago
Fancy Oneliner for Bioinformatics !!
This webpage lists some of the one-liners that we frequently use in metagenomic analyses. You can click on the following links to browse through different topics. You ca...2886 days ago
