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The Sybil software package provides a primarily web-based front-end to comparative genome datasets warehoused in a chado relational database. It was developed by the bioinformat...2852 days ago
GAGE : Genome Assembly Gold-standard Evaluation
...est large-scale genome assembly algorithms. We have organized this "bake-off" as an attempt to produce a realistic assessment of genome assembly software in a rapidly changing field...2852 days ago
OPERA : Optimal Paired-End Read Assembler
...e original publication, we have made significant changes to OPERA (v1.0 onwards) including refinements to...w features and algorithms is available at Genome Biology. We look forward to getting your feedback to...2850 days ago
- ...emblers, this is not a favorable solution.Fermi is designed to be used on a multi-core Linux machine with large shared memory. The easiest way to run fermi is to use the r...
2850 days ago
- DECIPHER is a software toolset that can be used to maintain, analyze, and decipher large amounts of DNA sequence data. To install DECIPHER, see the Downloads page. To begin us...
2829 days ago
- ...kers, and explore syntenic relationships between genomes. All browsing and interaction with Strudel happens in real-time – there is no need to wait while the maps are generate...
2829 days ago
- ...ki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minutes), or 8 mammals in 21 CPU hours (42 wall minutes)) scalable (Arbitr...
2829 days ago
- ..., ‘GeneBreak’ collects the genomic locations of chromosomal CNA-associated breaks that were previously pinpointed by the segmentation algorithm that was applied to obtain CNA profil...
2209 days ago
- AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organ...tricted by hierarchical structures. More at https://www.youtube.com/watch?v=vdGuy1GAJrQ
2822 days ago
- ...reate differential gene (miRNA) expression profiles and cluster reads using one of several algorithm. MIRO output is furthermore compatible with software such as genome browsers and...
2825 days ago
