Results for "genome structure"
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CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of bi...ks like performing upper-quantile normalization on expression data or convert genome wi...2919 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than...himeric sequence detection. PILER >De novo genome repeat finder. PILER-CR >Detection of CRISPR repeats in bacterial genomes.&...2913 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome as...
2905 days ago
- Function WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled contigs using mate-pair data. It also produces editable scaffold maps, allowing ei...
2905 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools f...using data from multiple individuals.Genome STRiP looks both across and within a set of sequenced genomes to detect variation. The met...s, but the method gains power across genomes and processing more genomes...
2850 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between ...FF/GTF, VCF. CrossMap is designed to liftover genome coordinates between assemblie...;a program for aligning sequences to reference genome....
2851 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other sc...d by mate-pairs. Such sources of information include alignment to a reference genome (B...
2871 days ago
- OrganellarGenomeDRAW is dedicated to convert genetic information stored in GenBank entries to graphical...for the creation of high-quality, detailed circular maps of organellar genomes like the plastid genome (p...
2871 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to id...f the post-treatment depends on the availability of a reference genome/tr...
2871 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo asse...alization and quality assessment of de novo genome assemblies Citation This so...alization and quality assessment of de novo genome as...
2863 days ago
