npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft...o facilitates the real-time analysis of positional information such as gene ordering and the detection of genes from mobile elements (plasmi...2591 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing...syntenic relationships as high-quality images, (iii) browse synteny blocks with genetic information and (iv) downl...2590 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for auto...y database and CAT. All data in dbCAN are generated based on the family clas...e most complete set of metagenomic CAZyme genes published so far and represe...2585 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was desi...tilizes tBLASTn and BLASTn algorithms to map genes from the reference genome (the...otate the majority of the new genome’s genes in a single step. ORFs present in the target genome and absent from the...2585 days ago
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DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer...putationally undemanding. It can be combined with genomic signature and/or phylogenetic tree-building procedures t...2561 days ago
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Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "f...ecies. Input formats, automated data upload from the UCSC Genome Browser, gene annotation, annotation of rep...2533 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ance...of genomes represented as sequences of genes (or synteny blocks) and prod...omes at the internal nodes of the phylogenetic tree. The phylogenetic tr...terest. Since version 2 MGRA supports gene insertion and deletions in ad...2528 days ago