Results for "plant genome"
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Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read ma...2910 days ago
- Function WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled contig...
2910 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite...using data from multiple individuals.Genome STRiP looks both across and within a set of sequenced genomes to detect variation. The met...ts, but the method gains power across genomes and processing more genomes...
2855 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between&...TF, VCF. CrossMap is designed to liftover genome coordinates between assemblie...rogram for aligning sequences to reference genome. We do not recomme...
2856 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open sourc...ed by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the...
2876 days ago
- OrganellarGenomeDRAW is dedicated to convert genetic information stored in GenBan...or the creation of high-quality, detailed circular maps of organellar genomes like the plastid genome (plastome) or the mitochondri...
2876 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcr...reatment depends on the availability of a reference genome/transcriptome and on the need...
2876 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. However, de...ion and quality assessment of de novo genome assemblies Citation This so...ion and quality assessment of de novo genome assemblies. In brief, our sc...
2868 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chi...ll. 2014. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome Biology 15 (6): R84. doi...
2867 days ago
- In this exercise, a previously annotated gene will be use...g approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE wi...prediction of initial exons in most cases. http://genome.crg.es/courses/Bioinformatics...
2866 days ago
