1611 days ago
1599 days ago
3D de novo assembly (3D DNA) pipeline
For a detailed description of the pipeline and how it integrates with other tools designed by the Aiden Lab see Genome Assembly Cookbook on http://aidenl...1591 days ago
Tadpole: an assembler, error-corrector, and read-extender
Tadpole is a kmer-based assembler, with additional capabilities of error-correcting and extending reads. It does no...er than length; which is to say, it stops at every branch, and condenses every repeat....1589 days ago
BlobToolKit: A toolkit for genome assembly QC
Filtering raw genomic datasets is essential to avoid chimeric assemblies and to incre...dy for visualisation in the Viewer. Paper https://www.biorxiv.org/content/10.1101/844852v1.full.pdf1573 days ago
1558 days ago
1537 days ago
HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Dataset) is a data set of...d End position in the entry, sequence, length, G+C content, presence of not AGCT data (n...re also reported (overall nucleotides, average G+C content, nucleotide scan check result...1460 days ago
merqury: Evaluate genome assemblies with k-mers
Often, genome assembly projects have illumina whole genome sequencing reads available...rovides a set of tools for this purpose. More at https://www.biorxiv.org/content/10.1101/2020.03.15.992941v1.f...1439 days ago
GraphUnzip: Phases an assembly graph using Hi-C data and/or long reads.
GraphUnzip, a fast, memory-efficient and accurate tool to unzip assembly graphs into...aphUnzip yielded highly continuous phased assemblies. https://www.biorxiv.org/content/biorxiv/early/2021/02/01/2021...1222 days ago