TRITEX sequence assembly pipeline for Triticeae genomes
The pipeline is open-source and hosted in a public Bitbucket repository. TRITEX...ntation than a BAC-by-BAC assembly. It has never been tested and is not expected to work on heterozyg...1772 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
The ability to generate massive amounts of sequencing data continues to overwhelm the processing capacity of existing algorithms and compute infrastructures. In this work, we explore...1696 days ago
WOS-C Women Scientist Scheme KIRAN-IPR
Women Scientist Scheme WOS-C is one among the most coveted...India, Department of Science & Technology (DST) to hel...grounds for a year, this, in turn, allows them to even work from home and maintain a good work and home lif...1642 days ago
heatmaply: popular graphical method for visualizing high-dimensional data
This work is based on ggplot2 and plotly.js engine. It produces similar heatmaps as d3heatm...gplot". This interface can provide smaller objects and faster rendering to disk in many cases and pro...1628 days ago
ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts,...1622 days ago
1600 days ago
The Global Alliance for Genomics and Health (GA4GH)
The Global Alliance for Genomics and Health (GA4GH) is a policy...responsible genomic data sharing within a human rights framework. GA4GH core funders and sponsors enable our work and allow us...1600 days ago
1598 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Python package to detect chromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version with conda: conda install -...1556 days ago
Mercator: Multiple Whole-Genome Orthology Map Construction
Whole-genome homology maps attempt to identify the evolutionary relationships...ved from the same region in an ancestral genome....n each genome and hypothetical ancestral genome. Map...enomic sequence. Here we present our initial work in the form...1498 days ago