Results for "Bioinformatics and Computational Biology"
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Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three...licons, WGS (whole genome sequences) and metatranscriptomic data. If a...ata, then bipype does reconstruction and pairs mer...he SA coordinates of the input reads and gen...2763 days ago
- PRISM is a software for split read (reads which span across a structrual variant -- SV ) mapping and SV calling from the mapping r...able to detect small insertions and abitrary size deletions, inve...rans-location events. PRISM and PRISM_CTX...the PRISM README file and&nbs...
2754 days ago
Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/community...on/ps/conference/super_biokdd.pdf https://ocw.mit.edu/courses/biology/7-91j-foundations-of-computational-and-systems-biology-spring-2014/lecture-slides/MI...2753 days ago
E-MEM: Efficient computation of Maximal Exact Matches
E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the..., E-MEM: Efficient computation of Maximal Exact Matches for very large genomes, Bioinfo...2749 days ago
- Mauve is a system for constructing multiple genome alignments in the pr...utionary events such as rearrangement and inversion. Multiple genome al...or research into comparative genomics and the study of genome-wide evolutionary d...me aligner should require only modest computa...
2022 days ago
- MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes...les the study of individual organisms and their interactions. Here we d...ilistic distances of genome abundance and tetranucleotide frequency. Tested on bo...ernative methods in both accuracy and computa...
2669 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. More at http://gkno.me/
2717 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for...tions or from rearrangement events. Computational tools that can visu...ation that still allows for a quick and comprehensive interpretation of all imp.... More at https://academic.oup.com/bioinfo...2715 days ago
- BioDownloader is a program for downloading and/or updating files from ftp/http servers....fically designed to deal with bioinformatics data files and servers: optimized to work with vast amount of data and very large file sets (~ 10,00...settings for the most common bioinformatics download needs bu...
2677 days ago
- Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial g...lls, recombination detection, and phylogenetic trees. Tools...fic microbial genomes. Genome Biology, 15 (11), 1-15 [PDF]...
2702 days ago
