2981 days ago
2980 days ago
2973 days ago
2973 days ago
mrFAST: Micro Read Fast Alignment Search Tool
...cial emphasis on the discovery of structural variation and segmental duplications. mrFAST maps short reads...ed to find 'all' mappings for a given set of reads, however it can return one "best" map locati...2973 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler desi..., feel free to use and report issues encountered. Canu is a hierachical assembly pipeline which runs...ocumentation New release https://github.com/marbl/canu/releases2956 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
...ompression, namely using a FCM (Markov model), of high context order (typically 20). For visualisation, Sm...esented with several HSV values (only value varies). The method can perform both in small- and l...2973 days ago
2959 days ago
YASS :: genomic similarity search tool
...or plain text format (it produces local pairwise alignments). Like most of the heuristic pairwise local alignment tools for DNA sequ...and then tries to extend them to local alignments. This genomic sea...orting of various alignment statistical parameters (mutation bias al...2967 days ago
Painless package development for R
...package development. With devtools, developing a package becomes so easy that it will be your default layout whenever you’re writing a significant amount of code. Before you...2966 days ago