Results for "Genomes Analyses"
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fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running...ta. It describes ancestry in an efficient way suitable for a range of further analyses, including population identif...2693 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can disp...omparisons between a large number of genomes, with a focus on handling gen...coverage can be displayed for draft genomes; customized graphs and annota...uence variation in a set of complete genomes,...
2690 days ago
- GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived f...re, parsing and visualize large genomic sequences, especially closely related genomes...
2689 days ago
- This sockeye software uses the Ensembl database project to import sequence and a...multiple and pair-wise alignment algorithms. The results of these comparative analyses are also displayed in the 3D...
2689 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchai...d. This algorithm can be used to mine large evolutionary conserved regions of genomes...2689 days ago
- Collectively, the bedtools utilities are a swiss-army knife of tools for a...mple task (e.g., intersect two interval files), quite sophisticated analyses can be conducted by combining...
2682 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained...fills or reduces as many captured gaps as possible to produce upgraded draft genomes....2679 days ago
YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, whi...fer substantially from the genome being sequenced. Mapping reads to reference genomes...2677 days ago
- A computational pipeline for identifying single-base substitutions between two closely related genomes without the help of a reference genome. DIAL works even when the depth of coverage is insufficient...
2677 days ago
- CLgenomics is a standalone desktop software specifically designed for bacterial genome a...bles rapid and responsive exploration of bacterial genomes. To use CLgenomics, individu...corresponds with one bacterial genome. If multiple genomes...
2675 days ago
