Carefully opt for human reference genome
Heng Li posted several issues with the human reference genomes given in these resources and su...g compressed FASTA file to be used as hg38/GRCh38 human reference genome. if you map...s: More at http://lh3.github.io/2017/11/13/which-human-r...1580 days ago
REGEN: Ancestral Genome Reconstruction for Bacteria
REGEN infers evolutionary events, including gene creation and deletion and replicon fission...ene pairs. REGEN was designed to be used with any set of genomes that are sufficiently related...2294 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
we design a simple heuristic method to further revise our single reference-based scaffolding...into a new one called Multi-CAR such that it can utilize multiple complete genomes of related...2294 days ago
G-compass: a comparative genome browser
G-compass (http://www.h-invitational.jp/g-compass/) is a comparative genome browser. It...es evolutionarily conserved genomic regions between human and other 12 vertebrates base...ents pursuing higher coverage (1,2). Annotations of human g...2257 days ago
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related...2252 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
HISAT2 is a fast and sensitive alignment program for mapping next-ge...(both DNA and RNA) to a population of human genomes (as well as to a sing...index that represents a population of human genomes, HISAT2 uses a large...th 55,000 indexes needed to cover the human p...2232 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Euk...combining all evidence for genes, from expressed sequences, genome assembly sequences, related...2232 days ago
CrossMap: a program for convenient conversion of genome coordinates
CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human h...2208 days ago
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