Results for "Whole genome re-sequencing"
Bookmarks
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-...hout relying on prior knowledge, but these do not scale to arbitrarily large genomes and a...2934 days ago
- DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selec...a lineage probability index (LPI) score for each genome protei...
2928 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is...ucial for genetic innovation and the evolution of genome architecture. Existing HGT de...stral (vertically derived) genes in its recipient genome. Detec...
2928 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bowtie, sam, bam, primer, tutorial, how-to, introductionRevisi...
2927 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with unifor...
2927 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform...before 60nt. A5-miseq assumes it is assembling homozygous haploid genomes. Use a different assembler for metagenomes and h...
2871 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at dist...pping interactions between DNA regions, e.g., ChIA-PET and HiC, can generate genome-wide m...
2923 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput seq...default, Kaiju uses either the available complete genomes from NCBI RefSeq or the micr...with a protein database comprising 4821 microbial genomes. Kaij...
2923 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of b...s like performing upper-quantile normalization on expression data or convert genome wide g...
2921 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitu...ce detection. PILER >De novo genome repeat finder. PILER-CR...ction of CRISPR repeats in bacterial genomes. QSCORE >Compare two...ents for benchmarking. PALS >Whole-genome...2915 days ago
