Results for "genome structure"
Bookmarks
A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira...l. 2014. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome Bi...2862 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of d...approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE wi...prediction of initial exons in most cases. http://genome.cr...
2861 days ago
- gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and based on p...rates (Ka, Ks and Ka/Ks) between a well-annotated genome and a non-annotated genome or...taset. It is especially useful for newly sequenced genomes t...
2858 days ago
Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HS...BRs (shared by pigs and cattle) were detected using the pig and human genomes a...2785 days ago
Method in Comparative genomics !!
...duplicated genes in the yeast genome. The remaining ambiguities in...used this test to revisit the genome of S. cerevisiae, reducing th...genes) and refining the gene structure of hundreds of genes. We p...motif discovery. Based on the genome-wide conservation patterns of kn...2785 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as input asse...eturns scaffolded homozygous genome assembly, that should be ...lose the gaps resulting from genome assembly or scaffolding ...e laptop for small-to-medium size genomes...
2855 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program...ate contigs/scaffolds assembled in a genome assembly project, in a proces...are important for scaffolding large genomes (multi-library support, bett...and algorithms is available at Genome Bi...2847 days ago
- ...s on assembling Illumina short sequence reads from a mammal-sized genome. In addition to the role of a...us paradigm and uses the FM-DNA-index (FMD-index) as the key data structure. It is inspired by the string...
2847 days ago
- These tutorials are written for hundreds of bioinformaticians trying to cope with large...n the world of sequencing. Merely five years back, genome sequencing of higher eukaryotes used to be very expensive endeavor. To get a genome of...
2851 days ago
- The Sybil software package provides a primarily web-based front-end to comparative genome datasets warehoused in a chado relational...er Institute (JCVI) and the Institute for Genome Sciences (IGS) at the Univers...esearch projects that involve comparative genome an...
2849 days ago
