Results for "BMC"
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Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):184, 2013. http://bmi.osu.edu/hpc/software/benchmark/ htt...3925 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
...ic community. Reference: Panwar, B.; Arora, A. and Raghava, G.P.S. (2014) Prediction and classification of ncRNAs using structural informationBMC Genomics 2014, 15:1272512 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...t requiring any additional hardware devices. PLAST stands for Parallel Local Sequence Alignment Search Tool and is was published in BMC Bioinformatics. PLAST is a g...2375 days ago
MIX: Combining multiple assemblies from NGS data
...orresponds to a path in the extension graph that maximizes the cumulative contig length. The Mix algorithm, approach and results were published in BMC bioinformatics : http://...2217 days ago
- ...data are generated using GemSim (KE McElroy, F Luciani, T Thomas. Gemsim: General, Error-Model Based Simulator of Next-Generation Sequencing Data. BMC Genomics 2012, 13:74), with c...
2189 days ago
SALSA: A tool to scaffold long read assemblies with Hi-C
...Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read assemblies using long range contact information. BMC genomics, 18(1), 527. Link...2179 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
...ML, Tomberlin JK, Jones CD, Tarone AM. (2017) A scalable and memory-efficient algorithm for de novo transcriptome assembly of non-model organisms. BMC Genomics 18(Suppl 4):387....2161 days ago
- ...ffalo, USA Zhu Q, Kosoy M, Dittmar K. HGTector: an automated method facilitating genome-wide discovery of putative horizontal gene transfers. BMC Genomics. 2014. 15:717. Usag...
1959 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
...n the basis of frequency distributions at variant sites where only two bases are segregating. For more background see also the publication at BMC Bioinformatics. https://gith...1949 days ago
