Results for "Benchmarking"
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Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):184, 2013. http://bmi.osu.edu/hpc/software/benchmark/ http://b...3941 days ago
- Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/
3054 days ago
- ...ogs selected from OrthoDB. BUSCO assessments are implemented in open-source software, with comprehensive lineage-specific sets of Benchmarking Universal Single-Copy Ortholo...
2961 days ago
Bioinformatics tools and software
...o genome repeat finder. PILER-CR >Detection of CRISPR repeats in bacterial genomes. QSCORE >Compare two multiple alignments for benchmarking. PALS >Whole-genome a...2905 days ago
- DESCHRAMBLER is shown to produce highly accurate reconstructions using data simulation and by benchmarking it against other reconstruction tools You can find the detail of reconstructed data at http://bioinfo.konkuk.ac.kr/DESCHRAMBLER/
2546 days ago
LRCstats: Long Read Correction Statistics
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produced by P...2356 days ago
LRCstats: a tool for evaluating long reads correction methods
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produced by P...2127 days ago
geck: trio-based comparative benchmarking of variant calls
Determine the accuracy of our model by comparing the precision and recall of GATK Unified Genotyper and Haplotype Caller on the high-confidence SNPs of the NIST Ashkenazim...1857 days ago
simuG: a general-purpose genome simulator
Simulated genomes with pre-defined and random genomic variants can be very useful for benchmarking genomic and bioinformatics analyses. Here we introduce simuG, a lightweight tool for si...1664 days ago
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
...https://hub.docker.com/r/biodatageeks/. Supplementary information on benchmarking procedure as well as test dat...the project documentation site http://biodatageeks.org/sequila/benchmarking/benchmarking.html#depth-of-co...1647 days ago
