Results for "overlaps"
Blogs
Understanding reads mapping and flags !
...at is represented as a set of linear alignments that do not have large overlaps typically has one linear alig...s, we can find one alignmnet position which sequence do not have large overlaps, it called representative ali...1888 days ago
Bookmarks
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
...end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. PEAR evaluates all possible paired-end read overlaps and without requiring the tar...3002 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
...rrently alpha level, feel free to use and report issues encountered. Canu is a hierachical assembly pipeline which runs in four steps: Detect overlaps in high-noise sequences using...2966 days ago
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Genome Assembly Tools and Software - PART2 !!
...blast nucleotide databases in an attempt to obtain all sequences that overlaps, directly or indirectly, with...he trimmed reads afe fed into the 5-pass UMD Overlapper that finds the overlaps, corrects the base caller err...2737 days ago
Top-level pages
Worldwide funding agencies to fund your bioinformatics research !!
...d accessibility issues. Alfred P. Sloan Foundation: Money is available here throughout the year, covering science and engineering and their overlaps with civics, education, and e...2989 days ago
Wire posts
Bio-Scripts
- #!/usr/bin/perl use strict; use warnings; #For normal overlaps my ($lower, $upper) = (40, 100); f...and $upper\n", $is_between ? "" : " not"; } #For range to range overlaps #!/usr/bin/perl use stric...
2688 days ago
Insert the sequence at desire location in multi-fasta file with Perl
...llowing format --- Keep the coordinate sorted by name+location #GenomechrName locationStart AlienGene AlienLength # The coordinate should not overlaps --- next postition shold be b...2365 days ago
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GeneOverlap: An R package to test and visualize gene overlaps
Overlapping gene lists can reveal biological meanings and may lead to novel hypotheses. For example, histone modification is an important cellular mechanism that can pack and re-pack chromatin. By making the chromatin structure more dense or loose, the gene expression can be turned on or off. Tri...Tags: GeneOverlap, R, package, visualize, gene, overlaps
2007 days ago
Comments
- ...that for you. minReadLength=number - Ignore reads shorter than 'number' bases long. Default: 1000. minOverlapLength=number - Ignore read-to-read overlaps shorter than 'number' bases l...
2150 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...4 bubbles and trimmed 20 tips[M::main] ===> Step 4.3: cutting short overlaps (3 rounds in total) <===[M...removed 1392 asymmetric arcs[M::asg_arc_del_short] removed 4908 short overlaps[M::asg_cut_tip] cut 549 tips[...2332 days ago
