Many-Core Engine (MCE) for Perl example
...output order. MCE::Mutex Provides a simple semaphore implementation supporting threads and processes. MCE::Queue Provides a hybrid queuing implementation for MCE supporting normal queues and priority qu...2669 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
...ressive fashion allows to simultaneously work with scaffold assemblies obtained from any in silico and in vitro techniques, supporting multiple existing formats via...2338 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
...paper. Specifically, some of the terminology used below is outlined in Figure S2. The assembly procedure is described in detail in the Supporting Online Materials, specificall...2338 days ago
mojolicious: a next generation web framework for the Perl programming language.
...g), Promises/A+, keep-alive, connection pooling, timeout, cookie, multipart and gzip compression support. Built-in non-blocking I/O web server, supporting multiple event loops as well...2323 days ago
LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
...man algorithm is used to adjust the ends of LTR pair candidates to get alignment boundaries. These boundaries are subject to re-adjustment using supporting information of TG..CA box and...1957 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
...ration offers broad range of cheminformatics software tools supporting molecule manipulation and pro...rug design, high quality molecule depiction, molecular database tools supporting substructure and similarity s...1950 days ago
Apollo: a sequence annotation editor
...ces necessitates an interactive tool to allow biological experts to refine these approximations by viewing and independently evaluating the data supporting each annotation. Apollo was d...1731 days ago
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
...oject documentation site http://biodatageeks.org/sequila/benchmarking/benchmarking.html#depth-of-coverage. An archival copy of the code and supporting data is also available via th...1621 days ago
SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files
A general-purpose program to manipulate and parse information from FASTA/FASTQ files, supporting gzipped input files. Includes functions to interleave and de-interleave&n...814 days ago