Five unique traits of effective computational biologist
...er learned it a year before because it looked interesting; and the great biological programmer also read about the BioPerl packages, genomics, DNA string, genomic theories, or some si...3992 days ago
String graph based genome assembly software and tools !
...easons. i) it give different "string graph" prospective of long la...uction approach called ‘string graph’. Following are...into problems. 2. SAGE: String-overlap Assembly of GEnomes&n.... If you want to learn about String Graph assembler, please read...2371 days ago
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3992 days ago
Bioinformatics Algorithm Demonstrations and Tutorials
...that is easily comprehensible to users with little programming experience. The algorithms demonstrated include two approaches to approximate string matching (dynamic programming...3746 days ago
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We did not find any good and user friendly r...3995 days ago
Bio++ : C Language libraries for your biological need
...iles, probability distributions.etc. Utils Files: working on file paths, getting file extensions and names, testing existence, open and store in string arrays, etc.Text: convert tex...3990 days ago
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Best book Titles for Learning Bionformatics
..., Dennis Elliott Shasha (Editors), 1999, Oxford Univ Press Time Warps, String Edits, and Macromolecules: Th...logy, Joao Meidanis, Joao C. Setabal, 1997, PWS Pub. Co. Algorithms on Strings, Trees, and Sequences: Compu...3960 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...& Durbin, Genome Research 22:549-556, 2012 Full Text [Describes the String Graph Assembler (SGA), which...ndex of the 1.2 billion reads] Readjoiner: a fast and memory efficient string graph-based sequence assemble...3821 days ago
BEReX : Biomedical Entity-Relation eXplorer
BEReX is a new biomedical knowledge integration, search, and exploration tool. BEReX integrates eight popular databases (STRING, DrugBank, KEGG, PharmGKB, BioGRID, GO, HPRD, and MSigD...3882 days ago
Roche has acquired Bina Technologies !!!
...onate about accelerating that future together with Roche.Financial details of the deal were not disclosed. For Roche, the move is yet another in a string of acquisitions. Last week (D...3456 days ago
PostDocs positions in computer science in HELSINKI, FINLAND
...care system, including exceptionally good parental leaves, and children's day care services. Positions are offered in: Algorithm engineering (String Algorithms group) Algorithmi...3936 days ago
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Perl script to Mutate a DNA Sequence
...urrent_base); substr($dna,$position,1,$newbase); return $dna; } sub randomposition { my($string) = @_; return int rand length $string; } sub randomelement {...2958 days ago
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