Comment on "Benchmarking Perl Module !"
Benchmarking a Perl module involves measuring the performance of the module in terms of its execution time and memory usage. This can be done using the Perl Benchm...433 days ago
2117 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...ndex - If false, only one gapped spaced index will be used in region selection. If true, two such indexes (with different shapes) will be used (2x memory-hungry but more powerful for...2310 days ago
Comment on "QUAST: quality assessment tool for genome assemblies"
You can also try LAZER, it produces the same evaluation as Quast but is 5.6 times faster and use half the memory http://www.csd.uwo.ca/~ilie/LASER/2716 days ago
2817 days ago
Comment on "R and Bioconductor Tutorial"
Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or sets of sequences. http://www.bioconductor.org/packages/2.12/bioc/html/Biostrings.html3921 days ago