Comment on "Bioinformatics tools developed for Oxford Nanopore data analysis !"
NanoComp: comparing multiple runs NanoStat: statistic summary report of reads or alignments NanoFilt: filtering and trimming of reads NanoLyse: removing contaminant reads (e.g. lambda control DNA) from fastq2316 days ago
Comment on "Run miniasm assembler on nanopore reads !"
urbe@urbo214b[allONT] minimap2 -xava-ont both.fastq both.fastq -t20 -X > AONT.paf [][M::mm_idx_gen::107.693*1.96] coll...: 2.3-r531[M::main] CMD: minimap2 -xava-ont -t20 -X both.fastq both.fastq...~/Tools/miniasm/miniasm -f both.fastq AONT.paf > AONT.gfa [][M::main]...2343 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...used for mapping. Output SAM alignments will be in genome space (not...FASTA files. gfa - Graphical Fragment Assembly format. sam - Sequen...algorithm should be used for alignment. Options are: sg - Myers' bit...raction of the top score will be counted for ambiguity (mapping qual...2354 days ago
Comment on "List of genome announcement, notes and reporting journals"
The "Genomic Data" journal also publish genome announcement https://www.journals.elsevier.com/genomics-data/2372 days ago
Comment on "BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries"
One more intersting approach by Sonal Singhal @ https://github.com/CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen/blob/master/2-ScrubReads2377 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Informative bioinformatics bloggers Diving into Genetics and Genomics YOKOFAKUN Getting Genetics Done Gigabase or gigabyte Genome Spot CoreGenomics The Genome Fac...2383 days ago
Comment on "Virtual Bioinformatics Online Tutorial"
...s Crash Course Next-Gen Sequence Analysis Workshop (2013) R and NGS tutorial Bioinformatics Resources by Obi Griffith Tutorials developed and maintained by the worldwide Galaxy...2383 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...sp;The LancetelifeEBiomedicineGenes and developmentPNASBloodCellJAMA: The Journal...cogeneHuman MutationClinical Cancer ResearchPigment Cell & Melanoma ResearchB...tems Biology BioinformationGenome AnnouncementsBMC GeneticsBMC Medical Genet...2390 days ago
2406 days ago
Comment on "Ten International Scholarships for Indian Biotechnology and Bioinformatics Students"
You need to keep an eye on this early career fellowship https://www.leverhulme.ac.uk/funding/grant-schemes/early-career-fellowships2423 days ago