Results for "identifies"
Blogs
List of gene ontology software and tools
...s.technion.ac.il/ Gene Ontology for Functional Analysis (GOFFA) GOFFA is a tool developed for ArrayTrack™ that takes a list of genes and identifies terms in Gene Ontology (GO) d...3751 days ago
Software and Tools to detect structure variation with long reads !!
...parameter) or NGM-LR with the optional SAM attributes enabled! More at https://github.com/fritzsedlazeck/Sniffles MultiBreak-SV: It identifies structural variants from next...2649 days ago
- +3 more Blogs
Bookmarks
- HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assemblies usi...
1134 days ago
- ...ose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER identifies repeats, aligns ESTs and prot...
3051 days ago
- +21 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...ed Phrap with scaffolding), a WGS sequence assembler, that explicitly identifies exact kmer repeats from the s...equencesBRANCH is a software that extends de novo transfrags and identifies novel transfrags with DNA con...2727 days ago
Top-level pages
List of In-silico Binding Site Prediction Tools
...ein surface. Using an efficient maximum clique algorithm, the program identifies proteins that share local str...://scbx.mssm.edu/sitehound/sitehound-download/download.html SiteHound identifies protein regions that are like...3785 days ago
Next generation sequencing in R or bioconductor environment
...The PICS package applies probabilistic inference to aligned-read ChIP-Seq data in order to identify regions bound by transcription factors. PICS identifies enriched regions by modeling...3666 days ago
- +7 more Top-level pages
News
Webinar on Streamlining large scale analysis using the Strand NGS Pipeline Manager on 24 Feb 2016
...sers. Finally, we will show a brief glimpse of an elaborate pipeline that aligns reads, filters poor-quality matches, computes coverage metrics, identifies variants, checks for sample c...3053 days ago
- ...od and server created through NCBI research efforts that maps mutations on a protein structural complex, calculates changes in binding affinity, identifies deleterious mutations and pro...
2931 days ago
- +1 more News
Bio-Scripts
- ...a SAM/BAM/CRAM file MarkDuplicates (Picard) Identifies duplicate reads. MarkD...Duplicates on Spark MarkDuplicatesWithMateCigar (Picard) Identifies duplicate reads, accounting f...
2116 days ago
Comments
Comment on "Basic command-line to run BLAST"
BLAST compares a query sequence to a database of known sequences and identifies the most similar matches. This is useful for identifying the function of a newly discovered gene or for u...462 days ago
- ...ion can be performed by genome browsers like UCSC, IGB and IGV. However, R scripts can also be used to visualization. SAMStat SAMStat identifies problems and reports several...
2178 days ago
