Results for "mates reads"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...FASTX-toolkit: FASTQ/A short-reads pre-processing tools Home Pag...n FM-index of the 1.2 billion reads] Readjoiner: a fast and memo...roving RNA-Seq expression estimates by correcting for fragment bi...sis of the resulting sequence reads.] Genotyping by sequencing...3832 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with b...MetaSim A tool to generate collections of synthetic reads that reflect the diverse taxo...it.ly/rlsim-gitpIRS Profile-based Illumina pair-end reads simulator https://code.google...3789 days ago
List of In-silico Binding Site Prediction Tools
...iction algorithm that integrates evolutionary sequence conservation estimates with structure-based methods...nels, calculate pore dimensions and analyze atom accessibility. MolAxis reads files in the standard Protein...3796 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for N...his package is primairly focused on Solexa/Illumina reads. Documentation Rsamtools Rs...ons by modeling local concentrations of directional reads, and uses DNA fragment length...3677 days ago
Commercial and public next-gen-seq (NGS) software
...ynamatix. Will align Illumina reads against a range of Refseq RNA...ore accurate base quality estimates to the 454 pyrosequences. Dev...library construction size estimates, and uses it to improve the s...ification from Short Sequence Reads. BED file input. Raja Jothi @...3571 days ago
Software packages for next gen sequence analysis
...Assembles 20 - 64 bp Illumina reads to a FASTA reference genome....ut 20-25X coverage and paired reads. Developed by Daniel Zerbino...ore accurate base quality estimates to the 454 pyrosequences. Dev...library construction size estimates, and uses it to improve the s...3295 days ago
- Reformat is a member of the BBMap/B...tool designed for converting reads or other nucleotide data betw...pling (to a fraction of input reads, or an exact number of reads...q out=y.fa Interleave paired reads: reformat.sh in1=x1.fq in2=x2...to/bbmap/current/ jgi.ReformatReads" for example, java -ea -Xmx20...
2766 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...tifies indels from paired-end reads Input: BAM (aligned in SAMto...n do single, de novo, somatic reads; requires that raw reads are..., command line interface; estimates variance by all SNPs; 5 main...ong a marker), and ilink (estimates parameters including recombin...2961 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's...he sequence 5' CGAAGC 3' that, when reversed, still reads CGAAGC. Palindromes are impo...' CGAAGC 3', if inverted (reversed 180°), still reads CGAAGC. The European Molecul...2263 days ago
- alignment: the mapping of a raw seq...are for aligning raw sequence reads to a reference genome. BAM F...very low probability that the reads in your sample support a TT g...depth: the number of sequence reads that pile up at the same geno...Alignment Mapping of sequence reads to a known reference sequence...
2921 days ago
