3950 days ago
Structure of Binary files used for storing sequencing data-bam and sff
...who looking for structure of Bam and sff file: Bam: http://samtools.sourceforge.net/SAMv1.pdf (from page 12) sff file (for Ion torrent and 454 files): http://www.ncbi.nlm...3950 days ago
Best book Titles for Learning Bionformatics
...hms and Applications, Steffen Schulze-Kremer, 1995, Walter De Gruyter Introduct..., sequences and genomes, Michael S. Waterman, 1995, Chapman & Hall Computer...Practical Approach (Practical Approach Series 205), Mark Schena (Editor), 1999,...3948 days ago
Great Place to Study Bioinformatics in Europe
...KU Leuven, Belgium http://onderwijsaanbod.kuleuven.be/opleidingen/e/CQ_50269018.htm ETH, Zurich http...-programmes/ TUM , Munich Germany http://www.mastersportal.eu/studies/865/bioinformatics.html Universi...3062 days ago
Most Commonly used Awk by Bioinformatician
...re I will only show a few examples which cover most of bioinformatician daily uses of awk. choose rows where column 3 is larger than column 5: awk '$3>$5' input.txt > output.txt e...3943 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...ep wise explanationand implementation steps at http://dna.cs.byu.edu/bio465/Labs/hmm.shtml Source code w...isit http://www.planet-source-code.com/vb/scripts/ShowCode.asp?txtCodeId=75049&lngWId=1 Reference:...3855 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...Auer & Doerge, Genetics 185(2):405-16, 2010. PubMedCentral Bias...t al, BMC Bioinformatics 11:485, 2010. PubMedCentral TileQC:...p; Durbin, Genome Research 22:549-556, 2012 Full Text [Descri...et al, Bioinformatics 26:493-500, 2010 PubMedCentral [descri...3810 days ago
List of bioinformatics open source projects/software.
...wiss-Prot + TrEMBL), Gene Ontology (GO), UniRef (50,90,100), RefSeq, NCBI taxono...rkflow system that provides access to more than 150 genomic analysis tools GeWo...g and analysis, primarily consisting of gap4, gap5 and spin. STAMP Software pa...3787 days ago
List of In-silico Binding Site Prediction Tools
...ndant (sequence identity lower than 25%) version is available. Quate...mproves the success rate from 70 to 75% at the top 1 prediction. Met...ysis. PROSURFER: http://163.43.140.95/top contains information abou...ive ranks for each protein, of which 55% are in the first rank itsel...3774 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...//code.google.com/p/netrecodon/PEDAGOG Software for simulating eco-evolutionary population dynamics https://bcrc.bio.umass.edu/pedigreesoftware/node/5phenosim A tool to add phenoty...3767 days ago