Useful Publications and Websites for Deep Sequencing Data Analysis
...esign Statistical design and analysis of RNA sequencing data. Auer...latform for visualization and analysis of high-throughput sequence-b...Chromatin immunoprecipation analysis: ChIP-seq ChIP-seq: advantag...package called FSTpoolit for analysis of the resulting sequence rea...3832 days ago
List of bioinformatics open source projects/software.
...b/Software.html Metagenomics analysis software Anduril http://www...d workflow framework for data analysis Armadillo workflow platform...cess to more than 150 genomic analysis tools GeWorkbench http://wi...omkappa/ PromKappa (Promoter analysis by Kappa) software program us...3809 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...brary and program package for evolutionary genetics and genomics. http:/...ity under arbitrarily complex evolutionary scenarios http://cmpg.unibe.c...?source=navbarGASP Genometric Analysis Simulation Program. A software to...odel for population viability analysis (PVA). http://www.vortex9.org...3789 days ago
List of In-silico Binding Site Prediction Tools
...surfaces identified by shape analysis. In this relational database, we...servation encapsulated in the evolutionary history.(more) metaPocket: h...so available enabling further analysis. PROSURFER: http://163.43.14...ion algorithm that integrates evolutionary sequence conservation est...3796 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows...data. Documentation ChIP-Seq Analysis Packages Bioconductor provid...of RNA-Seq experiments is the analysis of splice junctions. The foll...3677 days ago
Commercial and public next-gen-seq (NGS) software
...xt Generation Sequencing data analysis. JMP Genomics - Next gen visualiz...GS, microarray, and qPCR data analysis. Streamlined analysis workflows f...on desktop computer. From the Evolutionary Genomics Lab at Sun-Yat S...hort sequence reads. From the Evolutionary Genomics Lab at Sun-Yat S...3571 days ago
3548 days ago
Apps for Busy Bioinformatics Researchers !!!
...s an iOS app that allows for the opening and analysis of DNA sequencing files - ab1. It...android app that allows for the opening and analysis of DNA sequencing files - ab1...public knowledge-base for information on the evolutionary timescale of life. This a...3594 days ago
3548 days ago
A guide for complete R beginners !
This tutorial is intended to introduce users quickly to the ba... biologists need to perform some basic analysis: load a table, plot som...eated to perform application specific tasks. e.g. analysis of microarray experiments and...3414 days ago